Add MCP server, note mutation endpoint, and updated_at tracking (v3.0.0)

New MCP server (mcp/) exposes kb operations as native MCP tools over
Streamable HTTP with Bearer token auth. Supports collections via tag
conventions, chunked file uploads, and agent-side search patterns.

Engine gains PATCH /api/v1/notes/{id} for in-place note updates with
transactional re-chunk/re-embed, and updated_at column on documents.

Go client adds updatenote command and Patch HTTP method.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

.gitignore

@@ -1,3 +1,6 @@
 examples/
 .claude/
-__pycache__/
+__pycache__/
+engine/data/
+
+TMP/